/*=========================================================================
 This file is part of the Horos Project (www.horosproject.org)
 
 Horos is free software: you can redistribute it and/or modify
 it under the terms of the GNU Lesser General Public License as published by
 the Free Software Foundation,  version 3 of the License.
 
 The Horos Project was based originally upon the OsiriX Project which at the time of
 the code fork was licensed as a LGPL project.  However, not all of the the source-code
 was properly documented and file headers were not all updated with the appropriate
 license terms. The Horos Project, originally was licensed under the  GNU GPL license.
 However, contributors to the software since that time have agreed to modify the license
 to the GNU LGPL in order to be conform to the changes previously made to the
 OsiriX Project.
 
 Horos is distributed in the hope that it will be useful, but
 WITHOUT ANY WARRANTY EXPRESS OR IMPLIED, INCLUDING ANY WARRANTY OF
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE OR USE.  See the
 GNU Lesser General Public License for more details.
 
 You should have received a copy of the GNU Lesser General Public License
 along with Horos.  If not, see http://www.gnu.org/licenses/lgpl.html
 
 Prior versions of this file were published by the OsiriX team pursuant to
 the below notice and licensing protocol.
 ============================================================================
 Program:   OsiriX
  Copyright (c) OsiriX Team
  All rights reserved.
  Distributed under GNU - LGPL
  
  See http://www.osirix-viewer.com/copyright.html for details.
     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.
 ============================================================================*/



#import <Cocoa/Cocoa.h>
#include <Accelerate/Accelerate.h>

@class DicomDatabase;

@class MPR2DController,NSCFDate, DicomStudy;
@class ViewerController, DicomImage;
@class BonjourBrowser;
@class AnonymizerWindowController,QueryController;
@class LogWindowController,PreviewView;
@class MyOutlineView,DCMView,DCMPix;
@class StructuredReportController,BrowserMatrix;
@class PluginManagerController,WaitRendering, Wait, ActivityWindowController;
@class WebPortalUser, DCMTKStudyQueryNode;

enum RootTypes{PatientRootType, StudyRootType, RandomRootType};
enum simpleSearchType {PatientNameSearch, PatientIDSearch};
enum queueStatus{QueueHasData, QueueEmpty};
enum dbObjectSelection {oAny,oMiddle,oFirstForFirst};

extern NSString * const __deprecated O2AlbumDragType; // was used to mark dragging pasteboards destinated to the Sources list in the Database window, we now make the list accept O2PasteboardTypeDatabaseObjectXIDs instead
extern NSString * const __deprecated O2DatabaseXIDsDragType; // the original UTI used for XID drags, use O2PasteboardTypeDatabaseObjectXIDs instead
extern NSString * const O2PasteboardTypeDatabaseObjectXIDs;

@interface NSString (BrowserController)
-(NSMutableString*)filenameString;
@end

/** \brief Window controller for Browser
 *
 *   This is a large class with a lot of functions.
 *   Along with managing the Browser Window it manages all the view in the browser
 *	and manages the database
 */

@interface BrowserController : NSWindowController
#if (MAC_OS_X_VERSION_MAX_ALLOWED > MAC_OS_X_VERSION_10_5)
<NSTableViewDelegate, NSDrawerDelegate, NSMatrixDelegate, NSToolbarDelegate, NSMenuDelegate,NSSplitViewDelegate>   //NSObject
#endif
{
    DicomDatabase*					_database;
    NSMutableDictionary				*databaseIndexDictionary;
    
    NSDateFormatter			*TimeFormat, *TimeWithSecondsFormat, *DateTimeWithSecondsFormat;
    
    NSRect					visibleScreenRect[ 40];
    NSString				*transferSyntax;
    NSArray                 *dirArray;
    NSToolbar               *toolbar;
    
    NSMutableArray			*sendQueue;
    NSMutableDictionary		*reportFilesToCheck;
    
    NSMutableArray          *previewPix, *previewPixThumbnails;
    
    NSMutableDictionary		*activeSends;
    NSMutableArray			*sendLog;
    NSMutableDictionary		*activeReceives;
    NSMutableArray			*receiveLog;
    
    LogWindowController		*logWindowController;
    
    DCMPix                  *curPreviewPix;
    
    NSTimer                 *refreshTimer;
    //    NSTimer                 *timer, *refreshTimer, *databaseCleanerTimer, *deleteQueueTimer;
    long					loadPreviewIndex, previousNoOfFiles;
    NSManagedObject			*previousItem;
    
    long					previousBonjourIndex;
    
    IBOutlet NSSplitView	*splitViewHorz, *splitViewVert, *splitAlbums, *splitDrawer, *splitComparative;
    CGFloat _splitViewVertDividerRatio;
    
    BOOL					setDCMDone, dontUpdatePreviewPane;
    
    NSTimeInterval          lastComputeAlbumsForDistantStudies;
    NSMutableDictionary     *_distantAlbumNoOfStudiesCache;
    NSThread                *distantSearchThread;
    NSMutableArray*         _albumNoOfStudiesCache;
    NSArray*                _cachedAlbums, *_cachedAlbumsIDs;
    NSManagedObjectContext* _cachedAlbumsContext;
    NSString                *selectedAlbumName;
    
    NSArray							*outlineViewArray, *originalOutlineViewArray;
    NSArray							*matrixViewArray;
    
    NSString						*_searchString;
    
    IBOutlet NSTextField			*databaseDescription;
    IBOutlet MyOutlineView          *databaseOutline;
    NSMenu							*columnsMenu;
    IBOutlet BrowserMatrix			*oMatrix;
    IBOutlet NSTableView			*albumTable;
    
    IBOutlet NSBox					*bonjourSourcesBox;
    
    IBOutlet NSArrayController*		_sourcesArrayController;
    IBOutlet NSTableView*			_sourcesTableView;
    id								_sourcesHelper;
    BonjourBrowser					*bonjourBrowser;
    
    IBOutlet NSSlider				*animationSlider;
    IBOutlet NSButton				*animationCheck;
    IBOutlet NSSplitView*           _bottomSplit;
    
    IBOutlet PreviewView			*imageView;
    IBOutlet NSView                 *matrixView;
    IBOutlet NSView                 *comparativeScrollView;
    
    int								subFrom, subTo, subInterval, subMax;
    
    IBOutlet NSWindow				*subOpenWindow;
    IBOutlet NSMatrix				*subOpenMatrix3D, *subOpenMatrix4D, *supOpenButtons;
    
    IBOutlet NSWindow				*subSeriesWindow;
    IBOutlet NSButton				*subSeriesOKButton;
    IBOutlet NSTextField			*memoryMessage;
    IBOutlet NSImageView			*leftIcon, *rightIcon;
    IBOutlet NSBox					*warningBox;
    
    IBOutlet NSWindow				*bonjourPasswordWindow;
    IBOutlet NSTextField			*password;
    
    IBOutlet NSWindow				*newAlbum;
    IBOutlet NSTextField			*newAlbumName;
    
    IBOutlet NSWindow				*rebuildWindow;
    IBOutlet NSMatrix				*rebuildType;
    IBOutlet NSTextField			*estimatedTime, *noOfFilesToRebuild, *warning;
    
    int								timeIntervalType;
    NSDate							*timeIntervalStart, *timeIntervalEnd;
    IBOutlet NSView					*timeIntervalView;
    
    NSString						*modalityFilter;
    IBOutlet NSPopUpButton          *modalityFilterMenu;
    IBOutlet NSView					*modalityFilterView;
    
    IBOutlet NSView					*searchView;
    IBOutlet NSSearchField			*searchField;
    IBOutlet NSButton               *searchInEntireDBResult;
    NSToolbarItem					*toolbarSearchItem;
    int								searchType;
    
    IBOutlet NSMenu					*imageTileMenu;
    IBOutlet NSWindow				*urlWindow, *CDpasswordWindow, *ZIPpasswordWindow;
    IBOutlet NSTextField			*urlString;
    
    IBOutlet NSForm					*rdPatientForm, *rdPixelForm, *rdVoxelForm, *rdOffsetForm;
    IBOutlet NSMatrix				*rdPixelTypeMatrix;
    IBOutlet NSView					*rdAccessory;
    
    IBOutlet NSView					*exportQuicktimeView;
    IBOutlet NSButton				*exportHTMLButton;
    
    IBOutlet NSView					*exportAccessoryView;
    IBOutlet NSMatrix				*compressionMatrix, *folderTree;
    
    NSPredicate						*testPredicate;
    
    BOOL							showAllImages, DatabaseIsEdited, isNetworkLogsActive;
    NSConditionLock					*queueLock;
    
    IBOutlet NSScrollView			*thumbnailsScrollView;
    
    NSPredicate						*_fetchPredicate, *_filterPredicate;
    NSString						*_filterPredicateDescription;
    
    NSString						*CDpassword, *pathToEncryptedFile, *passwordForExportEncryption;
    
    NSUInteger						previousFlags;
    
    NSMutableArray					*deleteQueueArray;
    NSRecursiveLock					*deleteQueue, *deleteInProgress;
    
    NSConditionLock					*processorsLock;
    
    NSMutableString					*pressedKeys;
    
    IBOutlet NSView					*reportTemplatesView;
    IBOutlet NSImageView			*reportTemplatesImageView;
    IBOutlet NSPopUpButton			*reportTemplatesListPopUpButton;
    int								reportToolbarItemType;
    
    IBOutlet NSWindow				*addStudiesToUserWindow;
    IBOutlet NSWindow				*notificationEmailWindow;
    IBOutlet NSArrayController		*notificationEmailArrayController;
    NSString						*temporaryNotificationEmail, *customTextNotificationEmail;
    
    NSImage							*notFoundImage;
    
    BOOL							ROIsAndKeyImagesButtonAvailable;
    
    BOOL							rtstructProgressBar;
    float							rtstructProgressPercent;
    
    BOOL							avoidRecursive, openSubSeriesFlag, openReparsedSeriesFlag;
    
    IBOutlet PluginManagerController *pluginManagerController;
    
    WaitRendering					*waitOpeningWindow;
    BOOL							waitCompressionAbort;
    
    NSMutableArray					*cachedFilesForDatabaseOutlineSelectionSelectedFiles;
    NSMutableArray					*cachedFilesForDatabaseOutlineSelectionCorrespondingObjects;
    NSMutableSet                    *cachedFilesForDatabaseOutlineSelectionTreeObjects;
    NSIndexSet						*cachedFilesForDatabaseOutlineSelectionIndex;
    
    id                              lastROIsAndKeyImagesSelectedFiles, lastROIsImagesSelectedFiles, lastKeyImagesSelectedFiles;
    NSArray                         *ROIsAndKeyImagesCache, *ROIsImagesCache, *KeyImagesCache;
    BOOL                            ROIsAndKeyImagesCacheSameSeries, ROIsImagesCacheSameSeries;
    
    BOOL                            _computingNumberOfStudiesForAlbums;
    
    IBOutlet NSTableView* _activityTableView;
    id _activityHelper;
    
    IBOutlet NSSplitView *bannerSplit;
    IBOutlet NSButton *banner;
    
    NSTimeInterval _timeIntervalOfLastLoadIconsDisplayIcons;
    NSThread *matrixLoadIconsThread;
    
    BOOL subSeriesWindowIsOn;
    
    NSRecursiveLock *searchForComparativeStudiesLock;
    NSString *comparativePatientUID; //Current patient history displayed
    NSMutableArray *comparativeStudySearchArray; //The queue of patient history to be searched
    NSArray *comparativeStudies; //Studies for the NSTableView
    IBOutlet NSTableView *comparativeTable;
    BOOL dontSelectStudyFromComparativeStudies;
    NSTimeInterval lastRefreshComparativeStudies; //Refresh the studies after X minutes
    
    NSMutableArray *comparativeRetrieveQueue; //Retrieve Queue: don't retrieve the same study multiple times
    DCMTKStudyQueryNode *comparativeStudyWaited; //The study to be selected or opened
    ViewerController *comparativeStudyWaitedViewer; //The destination viewer
    NSTimeInterval comparativeStudyWaitedTime; //The time when the study to be selected or opened was activated
    BOOL comparativeStudyWaitedToOpen; // for retrieveStudy: function
    BOOL comparativeStudyWaitedToSelect; // for retrieveStudy: function
    
    NSString *smartAlbumDistantName;
    NSArray *smartAlbumDistantArray;
    NSMutableArray *smartAlbumDistantSearchArray; //The queue of smart albums to be searched
    NSTimeInterval lastRefreshSmartAlbumDistantStudies;
    NSString *distantStudyMessage; // The text displayed in the matrix thumbnails
    
    NSDate *distantTimeIntervalStart, *distantTimeIntervalEnd;
    NSString *distantSearchString;
    int distantSearchType;
    int distantEntireDBResultCount, localEntireDBResultCount;
    
    BOOL autoretrievingPACSOnDemandSmartAlbum;
}

@property(retain,nonatomic) DicomDatabase* database;
@property(readonly) NSArrayController* sources;

@property(readonly) NSDateFormatter *DateTimeFormat __deprecated, *DateOfBirthFormat __deprecated, *TimeFormat, *TimeWithSecondsFormat, *DateTimeWithSecondsFormat;
@property(readonly) NSArray *matrixViewArray;
@property(readonly) NSMatrix *oMatrix;
@property(readonly) BOOL is2DViewer, isCurrentDatabaseBonjour;
@property(readonly) MyOutlineView *databaseOutline;
@property(readonly) NSTableView *albumTable;
@property(readonly) NSString *currentDatabasePath __deprecated, *localDatabasePath __deprecated, *documentsDirectory __deprecated, *fixedDocumentsDirectory __deprecated;

@property(readonly) NSBox *bonjourSourcesBox;
@property(readonly) BonjourBrowser *bonjourBrowser;
@property(readonly) const char *cfixedDocumentsDirectory __deprecated, *cfixedIncomingDirectory __deprecated, *cfixedTempNoIndexDirectory __deprecated, *cfixedIncomingNoIndexDirectory __deprecated;

@property(retain) NSString *searchString, *CDpassword, *pathToEncryptedFile, *passwordForExportEncryption, *temporaryNotificationEmail, *customTextNotificationEmail, *comparativePatientUID, *smartAlbumDistantName, *distantStudyMessage, *distantSearchString, *selectedAlbumName;
@property(retain) NSPredicate *fetchPredicate, *testPredicate;
@property(retain) NSArray *comparativeStudies;
@property(readonly) NSPredicate *filterPredicate;
@property(readonly) NSString *filterPredicateDescription;
@property(retain) NSDate *distantTimeIntervalStart, *distantTimeIntervalEnd;

@property(nonatomic, retain) NSString *modalityFilter;
@property(nonatomic) int timeIntervalType;
@property (nonatomic) NSTimeInterval databaseLastModification __deprecated;
@property(readonly) NSMutableDictionary *databaseIndexDictionary;
@property(readonly) PluginManagerController *pluginManagerController;
@property int distantSearchType;

+(void)initializeBrowserControllerClass;
+ (unsigned int)_currentModifierFlags;
+ (int) compressionForModality: (NSString*) mod quality:(int*) quality resolution: (int) resolution;
+ (BrowserController*) currentBrowser;
+ (NSMutableString*) replaceNotAdmitted: (NSString*)name;
+ (NSArray*) statesArray;
+ (void) updateActivity;
+ (BOOL) horizontalHistory;
+ (BOOL) isHardDiskFull __deprecated;
+ (NSData*) produceJPEGThumbnail:(NSImage*) image;
+ (int) DefaultFolderSizeForDB;
+ (long) computeDATABASEINDEXforDatabase:(NSString*) path __deprecated;
+ (void) encryptFileOrFolder: (NSString*) srcFolder inZIPFile: (NSString*) destFile password: (NSString*) password;
+ (void) encryptFileOrFolder: (NSString*) srcFolder inZIPFile: (NSString*) destFile password: (NSString*) password deleteSource: (BOOL) deleteSource;
+ (void) encryptFileOrFolder: (NSString*) srcFolder inZIPFile: (NSString*) destFile password: (NSString*) password deleteSource: (BOOL) deleteSource showGUI: (BOOL) showGUI;
+ (void) encryptFiles: (NSArray*) srcFiles inZIPFile: (NSString*) destFile password: (NSString*) password;
- (IBAction) createDatabaseFolder:(id) sender;
- (IBAction) addAlbum:(id)sender;
- (IBAction) deleteAlbum: (id)sender;
- (IBAction) saveAlbums:(id) sender;
- (IBAction) addAlbums:(id) sender;
- (IBAction) defaultAlbums: (id) sender;
- (IBAction) clickBanner:(id) sender;
- (IBAction) refreshPACSOnDemandResults:(id)sender;
- (IBAction) drawerToggle: (id)sender;
- (void) openDatabasePath: (NSString*) path;
- (NSArray*) albums;
- (NSManagedObjectID*) currentAlbumID: (DicomDatabase*) d;
- (DicomStudy*) selectedStudy;
- (BOOL) shouldTerminate: (id) sender;
- (void) databaseOpenStudy: (NSManagedObject*) item;
- (void) databaseOpenStudy:(DicomStudy*) currentStudy withProtocol:(NSDictionary*) currentHangingProtocol;
- (IBAction) databaseDoublePressed:(id)sender;
- (void) setDBDate;
- (void) emptyDeleteQueueNow: (id) sender;
- (void) saveDeleteQueue;
- (void) closeWaitWindowIfNecessary;
- (void) displayWaitWindowIfNecessary;
- (void) showEntireDatabase;
- (void) subSelectFilesAndFoldersToAdd: (NSArray*) filenames;
- (void)matrixNewIcon:(long) index : (NSManagedObject*)curFile;
- (NSPredicate*) smartAlbumPredicate:(NSManagedObject*) album;
- (NSPredicate*) smartAlbumPredicateString:(NSString*) string;
- (void) emptyDeleteQueueThread;
- (void) emptyDeleteQueue:(id) sender;
- (BOOL)isUsingExternalViewer: (NSManagedObject*) item;
- (void) addFileToDeleteQueue:(NSString*) file;
- (NSString*) getNewFileDatabasePath: (NSString*) extension __deprecated;
- (NSString*) getNewFileDatabasePath: (NSString*) extension dbFolder: (NSString*) dbFolder __deprecated;
- (NSManagedObjectModel *) managedObjectModel __deprecated;

- (NSManagedObject*) findStudyUID: (NSString*) uid;
- (NSManagedObject*) findSeriesUID: (NSString*) uid;

- (NSManagedObjectContext *) localManagedObjectContext __deprecated;
- (NSManagedObjectContext *) localManagedObjectContextIndependentContext: (BOOL) independentContext __deprecated;

- (NSManagedObjectContext *) managedObjectContext __deprecated;
- (NSManagedObjectContext *) managedObjectContextIndependentContext:(BOOL) independentContext __deprecated;
- (NSManagedObjectContext *) managedObjectContextIndependentContext:(BOOL) independentContext path: (NSString *) path __deprecated;

- (NSManagedObjectContext *) defaultManagerObjectContext __deprecated;
- (NSManagedObjectContext *) defaultManagerObjectContextIndependentContext: (BOOL) independentContext __deprecated;

- (BOOL) isBonjour: (NSManagedObjectContext*) c __deprecated;
- (NSString *) localDocumentsDirectory __deprecated;
- (void) alternateButtonPressed: (NSNotification*)n;
- (NSArray*) childrenArray: (id) item;
- (NSArray*) childrenArray: (id) item onlyImages:(BOOL) onlyImages;
- (NSArray*) imagesArray: (id) item;
- (NSArray*) imagesArray: (id) item preferredObject: (int) preferredObject;
- (NSArray*) imagesArray: (id) item onlyImages:(BOOL) onlyImages;
- (NSArray*) imagesArray: (id) item preferredObject: (int) preferredObject onlyImages:(BOOL) onlyImages;
- (void) setNetworkLogs;
- (BOOL) isNetworkLogsActive;
- (void) computeTimeInterval;
- (void) ReadDicomCDRom:(id) sender __deprecated;
- (NSString*) INCOMINGPATH __deprecated;
- (NSString*) TEMPPATH __deprecated;
- (IBAction) matrixDoublePressed:(id)sender;
- (void) addURLToDatabaseEnd:(id) sender;
- (void) addURLToDatabase:(id) sender;
- (NSArray*) addURLToDatabaseFiles:(NSArray*) URLs;
- (BOOL) findAndSelectFile: (NSString*) path image: (DicomImage*) curImage shouldExpand: (BOOL) expand;
- (BOOL) findAndSelectFile: (NSString*) path image: (DicomImage*) curImage shouldExpand: (BOOL) expand extendingSelection: (BOOL) extendingSelection;
- (void) selectServer: (NSArray*) files;
- (long) saveDatabase __deprecated;
- (long) saveDatabase:(NSString*) path __deprecated;
- (long) saveDatabase: (NSString*)path context: (NSManagedObjectContext*) context __deprecated;
- (void) addDICOMDIR:(NSString*) dicomdir :(NSMutableArray*) files;
- (void) copyFilesIntoDatabaseIfNeeded: (NSMutableArray*)filesInput options: (NSDictionary*) options;
- (ViewerController*) loadSeries :(NSManagedObject *)curFile :(ViewerController*) viewer :(BOOL) firstViewer keyImagesOnly:(BOOL) keyImages;
- (void) loadNextPatient:(NSManagedObject *) curImage :(long) direction :(ViewerController*) viewer :(BOOL) firstViewer keyImagesOnly:(BOOL) keyImages;
- (void) loadNextSeries:(NSManagedObject *) curImage :(long) direction :(ViewerController*) viewer :(BOOL) firstViewer keyImagesOnly:(BOOL) keyImages;
- (ViewerController*) openViewerFromImages:(NSArray*) toOpenArray movie:(BOOL) movieViewer viewer:(ViewerController*) viewer keyImagesOnly:(BOOL) keyImages;
- (ViewerController*) openViewerFromImages:(NSArray*) toOpenArray movie:(BOOL) movieViewer viewer:(ViewerController*) viewer keyImagesOnly:(BOOL) keyImages tryToFlipData:(BOOL) tryToFlipData;
- (void) export2PACS:(id) sender;
+ (void)setPath:(NSString*)path relativeTo:(NSString*)dirPath forSeriesId:(int)seriesId kind:(NSString*)kind toSeriesPaths:(NSMutableDictionary*)seriesPaths; // used by +exportQuicktime
+ (void) exportQuicktime:(NSArray*)dicomFiles2Export :(NSString*)path :(BOOL)html :(BrowserController*)browser :(NSMutableDictionary*)seriesPaths;
- (void) exportQuicktimeInt:(NSArray*) dicomFiles2Export :(NSString*) path :(BOOL) html;
+ (void) multiThreadedImageConvert: (NSString*) what :(vImage_Buffer*) src :(vImage_Buffer *) dst :(float) offset :(float) scale;
- (IBAction) delItem:(id) sender;
- (void) proceedDeleteObjects: (NSArray*) objectsToDelete;
- (void) delObjects:(NSMutableArray*) objectsToDelete;
- (IBAction) selectFilesAndFoldersToAdd:(id) sender;
- (IBAction) showDatabase:(id)sender;
- (BOOL) displayStudy: (DicomStudy*) study object:(NSManagedObject*) element command:(NSString*) execute;
- (IBAction) matrixPressed:(id)sender;
- (void) loadDatabase:(NSString*) path __deprecated;
- (void) viewerDICOMInt:(BOOL) movieViewer dcmFile:(NSArray *)selectedLines viewer:(ViewerController*) viewer;
- (void) viewerDICOMInt:(BOOL) movieViewer dcmFile:(NSArray *)selectedLines viewer:(ViewerController*) viewer tileWindows: (BOOL) tileWindows;
- (NSToolbarItem *) toolbar: (NSToolbar *)toolbar itemForItemIdentifier: (NSString *) itemIdent willBeInsertedIntoToolbar:(BOOL) willBeInserted;
- (NSArray *)toolbarDefaultItemIdentifiers:(NSToolbar*)toolbar;
- (NSArray *)toolbarAllowedItemIdentifiers:(NSToolbar*)toolbar;
- (BOOL) validateToolbarItem: (NSToolbarItem *) toolbarItem;
- (NSArray*) exportDICOMFileInt:(NSString*) location files:(NSMutableArray*) filesToExport objects:(NSMutableArray*) dicomFiles2Export;
- (NSArray*) exportDICOMFileInt: (NSDictionary*) parameters;
- (void) processOpenViewerDICOMFromArray:(NSArray*) toOpenArray movie:(BOOL) movieViewer viewer: (ViewerController*) viewer;
- (void) setDatabaseValue:(id) object item:(id) item forKey:(NSString*) key;
- (void) setupToolbar;
- (float) fontSize: (NSString*) type;
- (void) setTableViewRowHeight;
- (void) addAlbumsFile: (NSString*) file;
- (void) sendFilesToCurrentBonjourDB: (NSArray*) files __deprecated;
- (NSString*) getDatabaseFolderFor: (NSString*) path __deprecated;
- (NSString*) getDatabaseIndexFileFor: (NSString*) path __deprecated;
- (IBAction) copyToDBFolder: (id) sender;
- (IBAction)customize:(id)sender;
- (IBAction)showhide:(id)sender;
- (IBAction) selectAll3DSeries:(id) sender;
- (IBAction) selectAll4DSeries:(id) sender;
- (IBAction) switchSoundex: (id)sender;
- (void) exportDICOMFile:(id) sender;
- (void) viewerDICOM:(id) sender;
- (void)newViewerDICOM:(id) sender;
- (void) viewerDICOMKeyImages:(id) sender;
- (void) viewerDICOMMergeSelection:(id) sender;
- (NSPredicate*) patientsnamePredicate: (NSString*) s;
- (NSPredicate*) patientsnamePredicate: (NSString*) s soundex:(BOOL) soundex;
- (IBAction)addSmartAlbum: (id)sender;
- (IBAction)search: (id)sender;
- (IBAction)setSearchType: (id)sender;
- (IBAction) saveDBListAs:(id) sender;
- (IBAction) openDatabase:(id) sender;
- (void) checkReportsDICOMSRConsistency __deprecated;
- (void) openDatabaseIn:(NSString*) a Bonjour:(BOOL) isBonjour __deprecated;
- (void) openDatabaseIn: (NSString*)a Bonjour: (BOOL)isBonjour refresh: (BOOL) refresh __deprecated;
- (void) browserPrepareForClose;
- (IBAction) endReBuildDatabase:(id) sender;
- (IBAction) ReBuildDatabaseSheet: (id)sender;
- (IBAction) previewSliderAction:(id) sender;
- (void) addHelpMenu;
+ (NSString*) _findFirstDicomdirOnCDMedia: (NSString*)startDirectory __deprecated;
+ (BOOL)isItCD:(NSString*) path;
- (void)storeSCPComplete:(id)sender;
- (NSMutableArray *) filesForDatabaseOutlineSelection :(NSMutableArray*) correspondingDicomFile;
- (NSMutableArray *) filesForDatabaseOutlineSelection :(NSMutableArray*) correspondingManagedObjects onlyImages:(BOOL) onlyImages;
- (NSMutableArray *) filesForDatabaseMatrixSelection :(NSMutableArray*) correspondingManagedObjects;
- (NSMutableArray *) filesForDatabaseMatrixSelection :(NSMutableArray*) correspondingManagedObjects onlyImages:(BOOL) onlyImages;
- (void)setToolbarReportIconForItem: (NSToolbarItem *)item;
- (void) addFiles: (NSArray*) files withRule:(NSDictionary*) routingRule __deprecated;
- (void) resetListenerTimer __deprecated;
- (IBAction) albumTableDoublePressed: (id)sender;
//- (IBAction) smartAlbumHelpButton:(id) sender;
- (IBAction) regenerateAutoComments:(id) sender;
- (DCMPix *)previewPix:(int)i;
- (NSArray*) addFilesToDatabase:(NSArray*) newFilesArray __deprecated;
- (void) addFilesAndFolderToDatabase:(NSArray*) filenames; // asks what to do with files
- (NSArray*) addFilesToDatabase:(NSArray*) newFilesArray onlyDICOM:(BOOL) onlyDICOM  produceAddedFiles:(BOOL) produceAddedFiles __deprecated;
- (NSArray*) addFilesToDatabase:(NSArray*) newFilesArray onlyDICOM:(BOOL) onlyDICOM  produceAddedFiles:(BOOL) produceAddedFiles parseExistingObject:(BOOL) parseExistingObject __deprecated;
- (NSArray*) addFilesToDatabase:(NSArray*) newFilesArray onlyDICOM:(BOOL) onlyDICOM  produceAddedFiles:(BOOL) produceAddedFiles parseExistingObject:(BOOL) parseExistingObject context: (NSManagedObjectContext*) context dbFolder:(NSString*) dbFolder __deprecated;
- (NSArray*) addFilesToDatabase:(NSArray*) newFilesArray onlyDICOM:(BOOL) onlyDICOM  safeRebuild:(BOOL) safeRebuild produceAddedFiles:(BOOL) produceAddedFiles __deprecated;
+(NSArray*)addFiles:(NSArray*)newFilesArray toContext:(NSManagedObjectContext*)context onlyDICOM:(BOOL)onlyDICOM  notifyAddedFiles:(BOOL)notifyAddedFiles parseExistingObject:(BOOL)parseExistingObject dbFolder:(NSString*)dbFolder __deprecated;
+(NSArray*)addFiles:(NSArray*)newFilesArray toContext:(NSManagedObjectContext*)context toDatabase:(BrowserController*)browserController onlyDICOM:(BOOL)onlyDICOM  notifyAddedFiles:(BOOL)notifyAddedFiles parseExistingObject:(BOOL)parseExistingObject dbFolder:(NSString*)dbFolder __deprecated;
+(NSArray*)addFiles:(NSArray*)newFilesArray toContext:(NSManagedObjectContext*)context toDatabase:(BrowserController*)browserController onlyDICOM:(BOOL)onlyDICOM  notifyAddedFiles:(BOOL)notifyAddedFiles parseExistingObject:(BOOL)parseExistingObject dbFolder:(NSString*)dbFolder generatedByOsiriX:(BOOL)generatedByOsiriX __deprecated;
+(NSArray*) addFiles:(NSArray*) newFilesArray toContext: (NSManagedObjectContext*) context toDatabase: (BrowserController*) browserController onlyDICOM: (BOOL) onlyDICOM  notifyAddedFiles: (BOOL) notifyAddedFiles parseExistingObject: (BOOL) parseExistingObject dbFolder: (NSString*) dbFolder generatedByOsiriX: (BOOL) generatedByOsiriX mountedVolume: (BOOL) mountedVolume __deprecated;
+ (BOOL) unzipFile: (NSString*) file withPassword: (NSString*) pass destination: (NSString*) destination;
+ (BOOL) unzipFile: (NSString*) file withPassword: (NSString*) pass destination: (NSString*) destination showGUI: (BOOL) showGUI;
- (int) askForZIPPassword: (NSString*) file destination: (NSString*) destination;
- (IBAction) reparseIn3D:(id) sender;
- (IBAction) reparseIn4D:(id) sender;
- (void)selectStudyWithObjectID:(NSManagedObjectID*)oid;
- (BOOL) selectThisStudy: (id)study;

- (void) previewPerformAnimation:(id) sender;
- (void) matrixDisplayIcons:(id) sender;
- (void) selectDatabaseOutline;

- (NSArray*) KeyImages: (id) sender;
- (NSArray*) ROIImages: (id) sender;
- (NSArray*) ROIsAndKeyImages: (id) sender;
- (NSArray*) ROIsAndKeyImages: (id) sender sameSeries: (BOOL*) sameSeries;

- (void) refreshColumns;
- (NSString*) outlineViewRefresh;
- (void) matrixInit:(long) noOfImages;
- (void)matrixLoadIcons: (NSDictionary*)dict;
- (NSArray*) albumArray;
- (void) refreshAlbums;
- (void) waitForRunningProcesses;

- (NSArray*) imagesPathArray: (NSManagedObject*) item;

- (void) autoCleanDatabaseFreeSpace:(id) sender __deprecated;
- (void) autoCleanDatabaseDate:(id) sender __deprecated;

- (void) refreshDatabase:(id) sender;
- (void) syncReportsIfNecessary;

//bonjour
-(NSManagedObjectContext*)bonjourManagedObjectContext __deprecated;
- (void) setBonjourDatabaseValue:(NSManagedObject*) obj value:(id) value forKey:(NSString*) key __deprecated;
- (NSString*) getLocalDCMPath: (NSManagedObject*) obj :(long) no;
- (void) displayBonjourServices;
- (NSString*) askPassword;
- (void) resetToLocalDatabase;
- (void) switchToDefaultDBIfNeeded __deprecated;
- (void) checkIncomingThread:(id) sender __deprecated;
- (void) checkIncoming:(id) sender __deprecated;
- (void) checkIncomingNow:(id) sender __deprecated;
- (NSArray*) openSubSeries: (NSArray*) toOpenArray;
- (IBAction) checkMemory:(id) sender;
- (IBAction) buildAllThumbnails:(id) sender;

// Finding Comparisons
- (NSArray *)relatedStudiesForStudy:(id)study;

//DB plugins
- (void)executeFilterDB:(id)sender;

+ (NSString*) defaultDocumentsDirectory  __deprecated;
- (NSString *)documentsDirectoryFor:(int) mode url:(NSString*) url  __deprecated;
- (IBAction)showLogWindow: (id)sender;
- (void) resetLogWindowController;

- (NSString *)folderPathResolvingAliasAndSymLink:(NSString *)path __deprecated;

- (void)setFilterPredicate:(NSPredicate *)predicate description:(NSString*) desc;
- (NSPredicate *)createFilterPredicate;
- (NSString *)createFilterDescription;
- (void) willChangeContext;

- (IBAction) deleteReport: (id) sender;
- (IBAction) convertReportToPDF: (id)sender;
- (IBAction) convertReportToDICOMSR: (id)sender;

- (IBAction) rebuildThumbnails:(id) sender;
- (IBAction)selectNoAlbums:(id)sender;
- (void) selectAlbumWithName: (NSString*) name;
- (NSArray *)databaseSelection;

+ (void) asyncWADOXMLDownloadURL:(NSURL*) url;

- (void) refreshMatrix:(id) sender;
- (void)updateReportToolbarIcon:(NSNotification *)note;

#ifndef OSIRIX_LIGHT
- (IBAction) paste: (id)sender;
- (IBAction) pasteImageForSourceFile: (NSString*) sourceFile;
- (void) decompressDICOMJPEG: (NSArray*) array __deprecated;
- (void) compressDICOMJPEG:(NSArray*) array __deprecated;
- (void) decompressArrayOfFiles: (NSArray*) array work:(NSNumber*) work __deprecated;
- (IBAction) compressSelectedFiles:(id) sender;
- (IBAction) decompressSelectedFiles:(id) sender;
- (void) importReport:(NSString*) path UID: (NSString*) uid;
- (IBAction) generateReport: (id) sender;
- (IBAction)importRawData:(id)sender;
- (void) pdfPreview:(id)sender;
- (IBAction) burnDICOM:(id) sender;
- (IBAction) anonymizeDICOM:(id) sender;
- (IBAction)retrieveSelectedPODStudies:(id) sender;
- (IBAction) queryDICOM:(id) sender;
- (IBAction) querySelectedStudy:(id) sender;
- (void) refreshComparativeStudies: (NSArray*) newStudies;
+ (NSArray*) comparativeServers;
- (IBAction) viewXML:(id) sender;
#endif

- (void) retrieveComparativeStudy: (DCMTKStudyQueryNode*) study select: (BOOL) select open: (BOOL) open;
- (void) retrieveComparativeStudy: (DCMTKStudyQueryNode*) study select: (BOOL) select open: (BOOL) open showGUI: (BOOL) showGUI viewer: (ViewerController*) viewer;
- (void) refreshComparativeStudiesIfNeeded:(id) timer;
- (NSArray*) distantStudiesForSmartAlbum: (NSString*) albumName;
- (void) initAnimationSlider;


- (void) setSearchString: (NSString *)searchString;

+ (NSString*) DateTimeWithSecondsFormat:(NSDate*) t;
+ (NSString*) TimeWithSecondsFormat:(NSDate*) t;
+ (NSString*) DateOfBirthFormat:(NSDate*) d __deprecated;
+ (NSString*) DateTimeFormat:(NSDate*) d __deprecated;
+ (NSString*) TimeFormat:(NSDate*) t;

- (int) findObject:(NSString*) request table:(NSString*) table execute: (NSString*) execute elements:(NSString**) elements __deprecated;

// - (void) executeSend :(NSArray*) samePatientArray server:(NSDictionary*) server dictionary:(NSDictionary*) dict __deprecated;

- (void)writeMovie:(NSArray*)imagesArray name:(NSString*)fileName;
- (void) buildThumbnail:(NSManagedObject*) series;

/******Notifactions posted by browserController***********
 OsirixNewStudySelectedNotification with userinfo key @"Selected Study" posted when a newStudy is selected in the browser
 @"Close All Viewers" posted when close open windows if option key pressed.
 @"DCMImageTilingHasChanged" when image tiling has changed
 OsirixAddToDBNotification posted when files are added to the DB
 */

+(NSInteger)_scrollerStyle:(NSScroller*)scroller;

+ (NSArray<NSString *> *)DatabaseObjectXIDsPasteboardTypes;

#pragma mark Deprecated

@property(readonly) NSManagedObjectContext *userManagedObjectContext __deprecated;
@property(readonly) NSManagedObjectModel *userManagedObjectModel __deprecated;

-(long)saveUserDatabase __deprecated;
-(WebPortalUser*)userWithName:(NSString*)name __deprecated;



@end

#import "BrowserController+Sources.h"